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NextGen Sciences bcbio nextgen workflow
Bcbio Nextgen Workflow, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bcbio+nextgen+workflow/bcbio+nextgen+pipeline/pm38097740-60-7-8
Average 90 stars, based on 1 article reviews
bcbio nextgen workflow - by Bioz Stars, 2026-09
90/100 stars

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Sequencing:

Article Title: Compartment-specific multiomic profiling identifies SRC and GNAS as candidate drivers of epithelial-to-mesenchymal transition in ovarian carcinosarcoma.
Article Snippet: Whole exome libraries were prepared using the Illumina TruSeq Exome Library Prep kit (Illumina, FC-150–1002) according to the manufacturer’s protocol, modified for FFPE DNA (Supplement A), and sequenced using the NextSeq2000 (Illumina). .. Exome sequencing data were processed using the bcbio nextgen workflow (v1.2.4) for tumour-only sequencing: reads were aligned to the human reference genome (GRCh38) using bwa (v0.7.17) and duplicates were marked prior to base quality score recalibration with GATK v4.1.9. ..



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https://www.bioz.com/product/bcbio+nextgen+workflow/bcbio+nextgen+pipeline/pm38097740-60-7-8
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